plot_primer_binding_regions-Primers-Templates-method: Plot of Primer Binding Regions for a Single Primer Set.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Plot of Primer Binding Regions for a Single Primer Set.

Description

Plots the primer binding regions in the templates.

Usage

## S4 method for signature 'Primers,Templates'
plot_primer_binding_regions(
  primers,
  templates,
  direction = c("both", "fw", "rev"),
  group = NULL,
  relation = c("fw", "rev"),
  region.names = c("Binding region", "Amplification region")
)

Arguments

primers	An object of class Primers with annotated primer coverage.
templates	An object of class Templates providing the template sequences corresponding to primers.
direction	Primer direction
group	The template groups for which binding events should be determined. By default, group is set to NULL such that all templates are considered.
relation	A character vector specifying whether binding region data shall be plotted relative to the forward (fw) or reverse (rev) target binding regions.
region.names	Names for the primer binding region and the amplified region.

Value

A histogram of primer binding regions.

matdoering/openPrimeR documentation built on Feb. 11, 2024, 9:22 p.m.