apply.constraint.list: Apply Constraints to a List.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Apply Constraints to a List.

Description

Checks whether the input values are within the specified limits.

Usage

apply.constraint.list(
  gc.ratio.fw,
  gc.ratio.rev,
  min.GC,
  max.GC,
  fw.idx,
  rev.idx,
  mode.directionality = c("fw", "rev", "both")
)

Arguments

gc.ratio.fw	Forward values (comma-separated strings).
gc.ratio.rev	Reverse values (comma-separated strings).
min.GC	Minimal allowed value.
max.GC	Maximal allowed value.
fw.idx	Indices of forward values to consider.
rev.idx	Indices of reverse values to consider.
mode.directionality	Direction of primers

Details

Applies a constraint to every element in a vector of comma separated strings. Applied when filtering covered seqs according to primer efficiency.

Value

Data frame with TRUE for values fulfilling the constraints, FALSE otherwise.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.