align.seqs: Multiple Sequence Alignment
In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis
View source: R/initialize_primers_tree.R
align.seqs R Documentation
Multiple Sequence Alignment
Description
Computes a multiple sequence alignment using MAFFT.
Usage
align.seqs(seqs, names)
Arguments
seqs
The sequences to be aligned.
names
The identifiers of the sequences.
Value
An alignment object as created from seqinr's read.alignment method.
References
Katoh, Misawa, Kuma, Miyata 2002 (Nucleic Acids Res. 30:3059-3066)
MAFFT: a novel method for rapid multiple sequence alignment based
on fast Fourier transform.
matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.
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View source: R/initialize_primers_tree.R
| align.seqs | R Documentation |
Multiple Sequence Alignment
Description
Computes a multiple sequence alignment using MAFFT.
Usage
align.seqs(seqs, names)
Arguments
seqs |
The sequences to be aligned. |
names |
The identifiers of the sequences. |
Value
An alignment object as created from seqinr's read.alignment method.
References
Katoh, Misawa, Kuma, Miyata 2002 (Nucleic Acids Res. 30:3059-3066) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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