assign_binding_regions.character: Character Assignment of Binding Regions

View source: R/templates.R

assign_binding_regions.characterR Documentation

Character Assignment of Binding Regions

Description

Generic method for assigning the binding region using individual binding regions.

Usage

## S3 method for class 'character'
assign_binding_regions(
  template.df,
  fw,
  rev,
  optimize.region = FALSE,
  primer.length = 20,
  gap.char = "-"
)

Arguments

template.df

Template data frame.

fw

FASTA file specifying the forward binding regions.

rev

FASTA file specifying the reverse binding regions.

optimize.region

Should the primer binding region be optimized using secondary structure prediction?

primer.length

Probe length for optimizing template secondary structure.

gap.char

The gap character for aligned sequences.

Value

Template data frame with assigned binding regions.


matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.