augment.primer.cvg: Augmentation of Primer Coverage.

In matdoering/openPrimeR: Multiplex PCR Primer Design and Analysis

Augmentation of Primer Coverage.

Description

Computes the coverage for the primers in primer.df that is still missing such that the relaxation procedure can adjust appropriate constraints.

Usage

augment.primer.cvg(
  primer.df,
  template.df,
  settings,
  partial = FALSE,
  constraint = NULL
)

Arguments

primer.df	A Primers object for which the primer coverage shall be augmented.
template.df	A Templates object.
settings	A DesignSettings object giving the parameters for coverage computations.
partial	Whether all missing primer coverage values should be computed. If partial is TRUE, only the coverage values of the primers that were excluded due to the specified constraint are computed.
constraint	A character vector specifying the exclusion reason for which the partial augmentation should take place.

Value

A Primers object with augmented coverage entries.

matdoering/openPrimeR documentation built on July 4, 2025, 3:59 a.m.