NEWS.md

In mathiaskalxdorf/IceR: Requantification of label-free DDA proteomics data pre-analyzed by MaxQuant.

IceR 0.9.16

Fixes

• Fixed issue in align_features() causing an error in case of R > 4.0

IceR 0.9.15

Fixes

• Corrected bug in case of processing of timsToF data
• Implemented additional error-catching during feature alignment

IceR 0.9.14

Fixes

• Fixed regex issue for raw filenames with specific substrings

IceR 0.9.13

Fixes

• Added additional console prints for better monitoring progress of IceR

IceR 0.9.12

Fixes

• Added up-front checking that samples were acquired with same gradient lengths. If major differences in gradient lengths are detected, IceR returns an error
• Added report of observed m/z and RT deviations between samples to console allowing detection if high inconsistencies are present
• Added warning in case of major deviations in m/z and RT between samples which will hamper reliable results from IceR

IceR 0.9.11

Fixes

• Check that selected quantification column in load_MaxQ_data() by parameter intensity_used is available and otherwise report an error

IceR 0.9.10

Fixes

• Fixed bug in requantify_features() during gam fitting of decoy feature intensities which can result in a crash if too few/no intensities are available (issue #4 on Github)
• Fixed bug in requantify_features() during preparation of some alignment performance QC plots (issue #7 on Github)
• Fixed bug in align_features() during feature alignment which could result in an unhandled error.

IceR 0.9.9

Initial release.

mathiaskalxdorf/IceR documentation built on Aug. 1, 2022, 8:03 a.m.