R/data.R

In mathornton01/Genomic-DFT-Yin-R: Fourier Analysis for Genomic Signals

#' GISAID sequence data for 1,322 SARS-CoV-2 Genomes from May 18, 2020
#' 
#' A dataset containing the the header and sequence information for 1,322 
#' different international sequence captures for the Single-Stranded Pluse-Sense
#' RNA virus called the SARS-Coronavirus 2 which is responsible for the outbreak
#' of the Covid19 Pandemic situation which began at the end of 2019. 
#' 
#' @format A dataframe with 1,322 rows and 2 columns: 
#' \describe{
#'  \item{Sequence}{The full sequence information in character form for the data}
#'  \item{Header}{The full header string extracted from the FASTA provided by GISAID}
#' }
#' @source \url{https://www.gisaid.org/}
"sarscvmay"


#' Aligned GISAID sequence data for 1,322 SARS-CoV-2 Genomes from May 18, 2020
#' 
#' A dataset containing the the header and sequence information for 1,322 
#' different international sequence captures for the Single-Stranded Pluse-Sense
#' RNA virus called the SARS-Coronavirus 2 which is responsible for the outbreak
#' of the Covid19 Pandemic situation which began at the end of 2019. This set has 
#' been aligned using the Clustal-Omega Software.
#' 
#' @format A dataframe with 1,322 rows and 2 columns: 
#' \describe{
#'  \item{Sequence}{The full sequence information in character form for the data}
#'  \item{Header}{The full header string extracted from the FASTA provided by GISAID}
#' }
#' @source \url{https://www.gisaid.org/}
"sarscvmayaligned"


#' GISAID sequence data for 1,397 SARS-CoV-2 Genomes from August 20, 2020
#' 
#' A dataset containing the the header and sequence information for 1,322 
#' different international sequence captures for the Single-Stranded Pluse-Sense
#' RNA virus called the SARS-Coronavirus 2 which is responsible for the outbreak
#' of the Covid19 Pandemic situation which began at the end of 2019. 
#' 
#' @format A dataframe with 1,397 rows and 2 columns: 
#' \describe{
#'  \item{Sequence}{The full sequence information in character form for the data}
#'  \item{Header}{The full header string extracted from the FASTA provided by GISAID}
#' }
#' @source \url{https://www.gisaid.org/}
"sarscvaug"

#' GISAID sequence data for 1,397 SARS-CoV-2 Genomes from August 20, 2020
#' 
#' A dataset containing the the header and sequence information for 1,322 
#' different international sequence captures for the Single-Stranded Pluse-Sense
#' RNA virus called the SARS-Coronavirus 2 which is responsible for the outbreak
#' of the Covid19 Pandemic situation which began at the end of 2019. This set has 
#' been aligned using the Clustal-Omega Software.
#' 
#' @format A dataframe with 1,397 rows and 2 columns: 
#' \describe{
#'  \item{Sequence}{The full sequence information in character form for the data}
#'  \item{Header}{The full header string extracted from the FASTA provided by GISAID}
#' }
#' @source \url{https://www.gisaid.org/}
"sarscvaugaligned"