singleARS_global: Resemblance analysis for single pair: global ARS and its...
In matianzhou/CAMO: Perform congruent analysis among model organisms
Description
Usage
Arguments
Value
Examples
Description
Resemblance analysis for single pair: global ARS and its permuted p-value
The singleARS_global is function to perform resemblance analysis
for single pair, generating global ARS and its permuted p-value.
Usage
1
2
singleARS_global(mcmc.merge.list, measure = "Fmeasure", parallel = F,
cpu = 2, B = 50)
Arguments
mcmc.merge.list:
a list of merged MCMC output matrices.
measure:
three types of ARS measures to be used: "youden",
"Fmeasure","geo.mean". Default is "Fmeasure".
parallel:
whether to perform parallel computing in permutation.
cpu:
if parallel=T, how many cpus to be used.
B:
number of permutations.
Value
global ARS values and its permuted p-value, in addition, the two
values are written to the folder named "arsGlobal".
Examples
1
2
3
4
5
## Not run:
#mcmc.merge.list from the merge step
ARS_global <- singleARS_global(mcmc.merge.list,B=100)
## End(Not run)
matianzhou/CAMO documentation built on May 21, 2019, 10:12 a.m.
R Package Documentation
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Description Usage Arguments Value Examples
Description
Resemblance analysis for single pair: global ARS and its permuted p-value
The singleARS_global is function to perform resemblance analysis
for single pair, generating global ARS and its permuted p-value.
Usage
1 2 | singleARS_global(mcmc.merge.list, measure = "Fmeasure", parallel = F,
cpu = 2, B = 50)
|
Arguments
mcmc.merge.list: |
a list of merged MCMC output matrices. |
measure: |
three types of ARS measures to be used: "youden", "Fmeasure","geo.mean". Default is "Fmeasure". |
parallel: |
whether to perform parallel computing in permutation. |
cpu: |
if parallel=T, how many cpus to be used. |
B: |
number of permutations. |
Value
global ARS values and its permuted p-value, in addition, the two values are written to the folder named "arsGlobal".
Examples
1 2 3 4 5 | ## Not run:
#mcmc.merge.list from the merge step
ARS_global <- singleARS_global(mcmc.merge.list,B=100)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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