Files in matteodelucchi/TRAL-Result-Analysis
Analysis of the output of TRAL
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE.txt
NAMESPACE
R/AAfreq_in_TR.R
R/AAfreq_in_fasta.R
R/AAfreq_in_prot.R
R/AAratio_vs_Disorderpropensity.R
R/TR_location.R
R/TRdist_in_proteome.R
R/beautifier.R
R/download_prot_sequence.R
R/getTRbyGene.R
R/load_kinome.R
R/load_swissprot.R
R/load_tr_annotations.R
R/paperfigure.R
R/plot_AAratio.R
R/plot_AAratio_comparison.R
R/plot_TRunitno-TRunitlength.R
R/protein_id_by_number_of_TR.R
README.html
README.md
TRALResultAnalysis.Rproj
data-raw/AAfreqSP.tsv
data-raw/create_AAfreqSP.R
data/AAfreqSP.rda
data/swissprot_human.tsv
data/swissprot_human_kinome.tsv
inst/_extdata/TRs_Wnt_proteins_CRC_sp.tsv
inst/_extdata/TRs_Wnt_proteins_CRC_sp_l100.tsv
inst/_extdata/TRs_favorable_proteins_CRC.tsv
inst/_extdata/TRs_favorable_proteins_CRC_sp.tsv
inst/_extdata/TRs_favorable_proteins_CRC_sp_l100.tsv
inst/_extdata/TRs_unfavorable_proteins_CRC.tsv
inst/_extdata/TRs_unfavorable_proteins_CRC_sp.tsv
inst/_extdata/TRs_unfavorable_proteins_CRC_sp_l100.tsv
inst/extdata/TRs_Wnt_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_favorable_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_favorable_proteins_CRC_url1.tsv
inst/extdata/TRs_gsk3beta_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_nfkappab_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_pi3k_akt_pten_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_ras_raf_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_unfavorable_proteins_CRC_sp_l1000.tsv
inst/extdata/TRs_unfavorable_proteins_CRC_url1.tsv
man/AAfreq_in_TR.Rd
man/AAfreq_in_fasta.Rd
man/AAfreq_in_prot.Rd
man/AAratio_vs_Disorderpropensity.Rd
man/TR_location.Rd
man/TRdist_in_proteome.Rd
man/beautifier.Rd
man/download_prot_sequence.Rd
man/getTRbyGene.Rd
man/load_kinome.Rd
man/load_swissprot.Rd
man/load_tr_annotations.Rd
man/paper.figure.Rd
man/plot_AAratio.Rd
man/plot_AAratio_comparison.Rd
man/protein_id_by_number_of_TR.Rd
vignettes/GeneralOverviewofTandemRepeats.R
vignettes/GeneralOverviewofTandemRepeats.Rmd
vignettes/GeneralOverviewofTandemRepeats.html
vignettes/NFkappaB.Rmd
vignettes/gsk3beta.Rmd
