TRdist_in_proteome: Tandem Repeat Distribution in Proteome
In matteodelucchi/TRAL-Result-Analysis: Analysis of the output of TRAL

Tandem Repeat Distribution in Proteome

TRdist_in_proteome(
  tr_all_sp,
  paperfigure = FALSE,
  max_pvalue = 0.01,
  max_l_effective = 80,
  max_n_effective = 40
)

`tr_all_sp`	a data.frame with TR results imported through `load_tr_annotations`
`paperfigure`	boolean. If TRUE, adapts figure for publication (larger font size, ...)
`max_pvalue`	upper threshold of p-value. `tr_all_sp` is subsetted for pvalue <= max_pvalue.
`max_l_effective`	upper threshold of l_effective `tr_all_sp` is subsetted for l_effective <= max_l_effective
`max_n_effective`	upper threshold of n_effective `tr_all_sp` is subsetted for n_effective <= max_n_effective

Distribution (Heatmap) of tandem repeats (TRs) in Swiss-Prot as a function of their repeat unit length $l_effective <= 80$ (x-Axis, x1) and their number of repeat units $n_effective <= 40$ (x2, y-Axis). Darker colour indicates a larger number of TRs with a specific length and number of repeats.

matteodelucchi/TRAL-Result-Analysis documentation built on Dec. 2, 2019, 11:42 p.m.