load_kinome: Load Human Proteome Kinome

In matteodelucchi/TRAL-Result-Analysis: Analysis of the output of TRAL

Description

Load Human Proteome Kinome

Usage

load_kinome(url, path, OnlyIDs = TRUE)

Arguments

url	string of the query to the UniProt REST API to download the protein sequences as fasta file.
path	string with the filepath to the .fasta file of the protein sequences
OnlyIDs	if TRUE, only the the ProteinIDs are return. If FALSE a XString class object of the AAStringSet is returned.

Examples

url_kin <- "https://www.uniprot.org/uniprot/?query=ec:2.7.10.-%20OR%20ec:2.7.11.-%20OR%20ec:2.7.12.-%20OR%20ec:2.7.13.-%20OR%20ec:2.7.14.-%20OR%20ec:2.7.99.-&format=fasta&sort=score&fil=proteome:UP000005640%20AND%20reviewed:yes%20AND%20organism:%22Homo%20sapiens%20(Human)%20[9606]%22"
load_kinome(url_kin, "/myProject/url_kin.fasta")

matteodelucchi/TRAL-Result-Analysis documentation built on Dec. 2, 2019, 11:42 p.m.