AAfreq_in_fasta: AA frequency from a fasta file
In matteodelucchi/TRAL-Result-Analysis: Analysis of the output of TRAL
Description
Usage
Arguments
Value
View source: R/AAfreq_in_fasta.R
Description
AA frequency from a fasta file
Usage
1
2
3
4
AAfreq_in_fasta(
path = "/home/delt/ZHAW/CRC_TRs/data/nfkappab_proteins_CRC_sp.fasta",
aa_ignore = c("U", "O", "B", "J", "Z", "X", "*", "-", ".", "+", "other")
)
Arguments
path
str. Path to the fasta file.
aa_ignore
character vector of symbols to ignore in the count.
Value
A data.frame with AA, it's absolute frequency and it's ratios.
matteodelucchi/TRAL-Result-Analysis documentation built on Dec. 2, 2019, 11:42 p.m.
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Description Usage Arguments Value
View source: R/AAfreq_in_fasta.R
Description
AA frequency from a fasta file
Usage
1 2 3 4 | AAfreq_in_fasta(
path = "/home/delt/ZHAW/CRC_TRs/data/nfkappab_proteins_CRC_sp.fasta",
aa_ignore = c("U", "O", "B", "J", "Z", "X", "*", "-", ".", "+", "other")
)
|
Arguments
path |
str. Path to the fasta file. |
aa_ignore |
character vector of symbols to ignore in the count. |
Value
A data.frame with AA, it's absolute frequency and it's ratios.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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