AlignSubspace: Align subspaces using dynamic time warping (DTW)

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Aligns subspaces so that they line up across grouping variable (only implemented for case with 2 categories in grouping.var)

Usage

AlignSubspace(object, reduction.type, grouping.var, dims.align,
  num.genes = 30, show.plots = FALSE, ...)

Arguments

object	Seurat object
reduction.type	reduction to align scores for
grouping.var	Name of the grouping variable for which to align the scores
dims.align	Dims to align, default is all
num.genes	Number of genes to use in construction of "metagene"
show.plots	show debugging plots
...	Additional parameters to ScaleData

Value

Returns Seurat object with the dims aligned, stored in object@dr$reduction.type.aligned

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.