FilterCells: Return a subset of the Seurat object

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Creates a Seurat object containing only a subset of the cells in the original object. Takes either a list of cells to use as a subset, or a parameter (for example, a gene), to subset on.

Usage

FilterCells(object, subset.names, low.thresholds, high.thresholds,
  cells.use = NULL)

Arguments

object	Seurat object
subset.names	Parameters to subset on. Eg, the name of a gene, PC1, a column name in [e-mail], etc. Any argument that can be retreived using FetchData
low.thresholds	Low cutoffs for the parameters (default is -Inf)
high.thresholds	High cutoffs for the parameters (default is Inf)
cells.use	A vector of cell names to use as a subset

Value

Returns a Seurat object containing only the relevant subset of cells

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.