AssessNodes: Assess Internal Nodes

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Method for automating assessment of tree splits over all internal nodes, or a provided list of internal nodes. Uses AssessSplit() for calculation of Out of Bag error (proxy for confidence in split).

Usage

AssessNodes(object, node.list, all.below = FALSE)

Arguments

object	Seurat object
node.list	List of internal nodes to assess and return
all.below	If single node provided in node.list, assess all splits below (and including) provided node .

Value

Returns the Out of Bag error for a random forest classifiers trained on each internal node split or each split provided in the node list.

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.