AssessSplit: Assess Cluster Split

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Method for determining confidence in specific bifurcations in the cluster tree. Use the Out of Bag (OOB) error of a random forest classifier to judge confidence.

Usage

AssessSplit(object, node, cluster1, cluster2, print.output = TRUE, ...)

Arguments

object	Seurat object
node	Node in the cluster tree in question
cluster1	First cluster to compare
cluster2	Second cluster to compare
print.output	Print the OOB error for the classifier
...	Arguments passed on to BuildRFClassifier training.genes Vector of genes to build the classifier on training.classes Vector of classes to build the classifier on verbose Additional progress print statements

Value

Returns the Out of Bag error for a random forest classifier trained on the split from the given node

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.