Files in mdavy86/polymapR

Linkage Analysis in Outcrossing Polyploids

R/aiding_functions.R R/exported_functions.R R/r3_functions.R R/r4_functions.R R/roxygen_datasets.R inst/doc/Vignette_polymapR.R inst/doc/Vignette_polymapR.Rmd man/ALL_dosages.Rd man/LGHomDf_P1_1.Rd man/MDSMap_from_list.Rd man/Mode.Rd man/P1_SxS_Assigned.Rd man/P1_homologues.Rd man/PCA_progeny.Rd man/SNSN_LOD_deviations.Rd man/SN_SN_P1.Rd man/add_dup_markers.Rd man/all_linkages_list_P1.Rd man/assign_SN_SN.Rd man/assign_linkage_group.Rd man/bridgeHomologues.Rd man/calcPotShifts.Rd man/calcSegtypeInfo.Rd man/calc_binning_thresholds.Rd man/calc_q1.Rd man/calc_q2.Rd man/calc_q3.Rd man/calc_qall.Rd man/checkF1.Rd man/checkFilename.Rd man/check_map.Rd man/check_marker_assignment.Rd man/chk2integer.Rd man/cluster_SN_markers.Rd man/cluster_per_LG.Rd man/colour.bar.Rd man/consensus_LG_assignment.Rd man/consensus_LG_names.Rd man/convert_marker_dosages.Rd man/correctDosages.Rd man/createChmHomList.Rd man/createMap.Rd man/createTetraOriginInput.Rd man/create_phased_maplist.Rd man/define_LG_structure.Rd man/digamfrq.Rd man/finish_linkage_analysis.Rd man/gcd.Rd man/gcd_all.Rd man/getConsensusGeno.Rd man/getMatchParents.Rd man/get_markertype_combinations.Rd man/homologue_lg_assignment.Rd man/integrated.maplist.Rd man/leftstr.Rd man/linkage.Rd man/linterpol.Rd man/makeProgeny.Rd man/maplist_P1.Rd man/marker_binning.Rd man/marker_binning_list.Rd man/marker_data_summary.Rd man/merge_homologues.Rd man/merge_marker_assignments.Rd man/orient_and_merge_maps.Rd man/overviewSNlinks.Rd man/p4_functions.Rd man/parental_quantities.Rd man/phase_SN_diploid.Rd man/phased.maplist.Rd man/plot_SNlinks.Rd man/plot_hom_vs_LG.Rd man/plot_linkage_df.Rd man/plot_map.Rd man/plot_phased_maplist.Rd man/polygamfrq.Rd man/polymapR.Rd man/prepare_pwd.Rd man/r3_functions.Rd man/r4_functions.Rd man/r6_functions.Rd man/r_LOD_plot.Rd man/rightstr.Rd man/screen_for_NA_values.Rd man/screen_for_duplicate_individuals.Rd man/screen_for_duplicate_markers.Rd man/segtypeInfoSummary.Rd man/selSegtypeInfo.Rd man/split_linkage_info.Rd man/test_LG_hom_stack.Rd man/test_cluster_stack.Rd man/test_dosage_matrix.Rd man/test_linkage_df.Rd man/test_prefpairing.Rd man/vector.to.matrix.Rd man/write.logheader.Rd man/write.mct.Rd man/write.pwd.Rd man/write_nested_list.Rd man/write_pwd_list.Rd vignettes/Vignette_polymapR.Rmd