Man pages for mehrankr/AbHAC
Aberration Hub Analysis of Cancer
| abhac.brief | AbHAC Based on Vector Inputs This function performs AbHAC... |
| clinical | TCGA BReast Cancer clinical information table for 40 patients |
| deizer | Differential Expression calculator function |
| ensembl.to.uniprot | Ensembl Gene ID to Uniprot Accession Conversion |
| entrez.to.uniprot | Entrez Gene ID to Uniprot accession |
| fac | Proteins Annotated in ppi.database data |
| get_edgedegree_freq | Making Protein Edge Reoccurence dataframe |
| hgnc.to.uniprot | HGNC Symbol to Uniprot Accession Conversion |
| id.conversion.set | Table for ID Conversions inside fucntions |
| ids.to.uniprot | any ID to Uniprot Conversion |
| Integrator | AbHAC Internal Enrichment Calculator |
| multiple.testing.correction.handler | Corrects p-values by the provided multiple testing correction... |
| permute_pdr | Create a permuted network |
| ppi.database | Whole Human Protein Interaction Network |
| refseqp.to.uniprot | Refseq Protein to Uniprot Conversion Function |
| remove_duplicate_interactions | Keeps only one undirected edge between two proteins |
| rna | TCGA BReast Cancer Expression Matrix for 40 Tumors and 22... |
| rna.id.conversion | Expression Matrix ID Conversion |
| set.abhac | This Function performs integrative analysis on the whole... |
| snv | TCGA BReast Cancer Mutation Matrix for 40 Patients |
| snv.id.conversion | Mutation Matrix ID Conversion |
| uniprot.to.entrez | Uniprot Accession to Entrez Gene ID conversion |
| uniprot.to.hgnc | Uniprot Accession to HGNC symbol Conversion |
