deizer: Differential Expression calculator function
In mehrankr/AbHAC: Aberration Hub Analysis of Cancer

Differential Expression calculator function

1 2	deizer(rna = NULL, expression.method = NULL, i = NULL, paired = NULL, correction.method = NULL, fdr.cutoff = NULL, fac = NULL)

`rna`	is expression matrix, method of determined expression, and index for samples to be included and pvalue adjustment method paired, a boolean, indicate if for each sample, we should expect adjacent normal tissue or not
`expression.method`	is a string either "Microarray" or "RNAseq"
`i`	is index of columns to calculate differential expression agains columns having N
`paired`	is a boolean showing if RNA samples are paired
`correction.method`	Any of the "holm", "hochberg", "hommel", "bonferroni", "BH", "BY" or "fdr" can be used.
`fdr.cutoff`	0.01 or 0.05 are suggested. All values in renge of 0 and 1 are accepted
`fac`	is all the proteins that exist in protein interaction network. If not using data(ppi.database), it is necessary to specify.