Description Usage Arguments Value Author(s)
Converts non-uniprot rownames of mutation matrix to uniprot. merges rows that output rowname is same. IDs should be in one of these formats: entrez gene IDs, HGNC or ENSEMBL gene IDs
1 | snv.id.conversion(snv = NULL, id.con.set = id.conversion.set)
|
snv |
for this function is a matrix of mutations with rownames as genes and colnames as samples |
id.con.set |
A dataframe for ID conversions provided as global variable id.conversion.set. Columns represent Entrez gene ID, Uniprot Accession, Gene Symbol, Ensembl gene ID and refseq protein ID (all human) |
This function finds uniprot IDs, removes rows without uniprot ID or duplicate uniprot ID
Mehran Karimzadeh mehran.karimzadehreghbati at mail dot mcgill dot ca
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