multiple.testing.correction.handler: Corrects p-values by the provided multiple testing correction...

In mehrankr/AbHAC: Aberration Hub Analysis of Cancer

Description

Corrects p-values by the provided multiple testing correction method

Usage

multiple.testing.correction.handler(list.pvalues, fisher.fdr, fisher.fdr.cutoff)

Arguments

list.pvalues	2 column dataframes of protein names and associated p-values must be put in a list structure where the 1st list member corresponds to the p-values based on the true protein interaction network and other list members if they exist must be based on permuted interaction networks
fisher.fdr	Multiple testing correction method from: "Permutation.FDR", "Permutation.FWER", or p.adjust methods.
fisher.fdr.cutoff	the cutoff for FWER of FDR (numeric)

Author(s)

Mehran Karimzadeh mehran dot karimzadehreghbati at mail dot mcgill dot ca

mehrankr/AbHAC documentation built on May 22, 2019, 6:49 p.m.