getCellBase-CellBaseR-method: getCellBase

getCellBase,CellBaseR-methodR Documentation

getCellBase

Description

The generic method for querying CellBase web services.

Usage

## S4 method for signature 'CellBaseR'
getCellBase(object, category, subcategory, ids, resource, param = NULL)

Arguments

object

an object of class CellBaseR

category

character to specify the category to be queried.

subcategory

character to specify the subcategory to be queried

ids

a character vector of the ids to be queried

resource

a character to specify the resource to be queried

param

an object of class CellBaseParam specifying additional param for the CellBaseR

Details

This method allows the user to query the cellbase web services without any predefined categories, subcategries, or resources.

Value

a dataframe holding the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

   cb <- CellBaseR()
   res <- getCellBase(object=cb, category="feature", subcategory="gene", 
   ids="TET1", resource="info")

melsiddieg/cellbaseR documentation built on Jan. 16, 2024, 4:12 a.m.