getTranscript-CellBaseR-method: getTranscript

In melsiddieg/cellbaseR: Querying annotation data from the high performance Cellbase web

getTranscript

Description

A method to query transcript data from Cellbase web services.

Usage

## S4 method for signature 'CellBaseR'
getTranscript(object, ids, resource, param = NULL)

Arguments

object	an object of class CellBaseR
ids	a character vector of the transcript ids to be queried, use ensemble transccript IDs eq, ENST00000380152
resource	a character vector to specify the resource to be queried
param	an object of class CellBaseParam specifying additional params for the query

Details

This method retrieves various genomic annotations for transcripts including exons, cDNA sequence, annotations flags, and cross references,etc.

Value

a dataframe with the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

   cb <- CellBaseR()
   res <- getTranscript(object=cb, ids="ENST00000373644", resource="info")

melsiddieg/cellbaseR documentation built on Jan. 16, 2024, 4:12 a.m.