getChromosomeInfo-CellBaseR-method: getChromosomeInfo

In melsiddieg/cellbaseR: Querying annotation data from the high performance Cellbase web

getChromosomeInfo

Description

A method to query sequence data from Cellbase web services.

Usage

## S4 method for signature 'CellBaseR'
getChromosomeInfo(object, ids, resource, param = NULL)

Arguments

object	an object of class CellBaseR
ids	a character vector of chromosome ids to be queried
resource	a character vector to specify the resource to be queried
param	a object of class CellBaseParam specifying additional param for the query

Details

A method to query sequence data from Cellbase web services. This method retrieves information about chromosomes, including its size and detailed information about its different cytobands

Value

a dataframe with the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

   cb <- CellBaseR()
   res <- getChromosomeInfo(object=cb, ids="22", resource="info")

melsiddieg/cellbaseR documentation built on Jan. 16, 2024, 4:12 a.m.