getGene-CellBaseR-method: getGene

In melsiddieg/cellbaseR: Querying annotation data from the high performance Cellbase web

getGene

Description

A method to query gene data from Cellbase web services.

Usage

## S4 method for signature 'CellBaseR'
getGene(object, ids, resource, param = NULL)

Arguments

object	an object of class CellBaseR
ids	a character vector of gene ids to be queried
resource	a character vector to specify the resource to be queried
param	an object of class CellBaseParam specifying additional param for the CellBaseR

Details

This method retrieves various gene annotations including transcripts and exons data as well as gene expression and clinical data

Value

a dataframe with the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

   cb <- CellBaseR()
   res <- getGene(object=cb, ids=c("TP73","TET1"), resource="info")

melsiddieg/cellbaseR documentation built on Jan. 16, 2024, 4:12 a.m.