plotCurve.one: plot a single fit of degradation or synthesis curve

In mengchen18/proturn: System-wise protein turnover curve fitting

Description

plot a single fit of degradation or synthesis curve

Usage

plotCurve.one(x, t, tcc = Inf, col = "red", curve = NULL, pch = 20,
  lty = 1, err.lwd = 2, main = "")

Arguments

x	an object returned by fitSynNLS or fitDegNLS with vector input
t	time points
tcc	cell doubling time
col	color, passed to plot
curve	what type of curve fit, if is not null, should be either "degradation" or "synthesis"
pch	passed to plot
lty	passed to plot
err.lwd	the line width of error bars
main	main title, passed to plot

Value

a plot generated, returns nothing

Note

This function won't work if input of fitSynNLS or fitDegNLS is a one row matrix

Examples

  tp <- c(0, 1, 2, 4, 8, 16, 32, 64)
  ratios <- degCurve(A=0.85, B = 0.1, kd=0.5, tcc=Inf, t = tp) + rnorm(length(tp), sd = 0.05)
  # vector input
  r <- fitDegNLS(ratios, t = tp, tcc = Inf)
  plotCurve.one(r, tp)

mengchen18/proturn documentation built on May 30, 2019, 4:37 p.m.