plot_encounter_diagnostic: Check predicted encounter probability against observed...

In merrillrudd/StreamUtils: Additional utilities for FishStats spatio-temporal modeling toolbox focusing on stream networks

Description

plot_encounter_diagnostic is a diagnostic function for checking validity of the encounter-probability component of a spatio-temporal model

Usage

plot_encounter_diagnostic(Report, Data, cutpoints_z = seq(0, 1, length =
  21), interval_width = 1.96, savedir = paste0(getwd(), "/"),
  PlotName = "Diag--Encounter_prob.png", ...)

Arguments

Report	tagged list of outputs from TMB model via Obj$report()
interval_width	width for confidence intervals
savedir	Directory (absolute path) and base for filenames of plots
PlotName	Name for plot
...	arguments passed to par

Value

Return Tagged list of output

Diag_i

Diagnostic output for each sample i

Diag_z

Diagnostic output for each bin z

merrillrudd/StreamUtils documentation built on May 29, 2019, 9:31 a.m.