plot_network: Plot stream network and optional observations

In merrillrudd/StreamUtils: Additional utilities for FishStats spatio-temporal modeling toolbox focusing on stream networks

Description

plot_network generates figure showing network nodes, directional arrows, and observations

Usage

plot_network(Extrapolation_List, Spatial_List, TmbData, Data_Geostat,
  category_names = NULL, observations = TRUE, arrows = TRUE,
  root = TRUE, savedir = NULL, plot_type = 1, show = TRUE,
  cex_network = 1, ...)

Arguments

Extrapolation_List	Output from Prepare_Extrapolation_Data_Fn
Spatial_List	Output from FishStatsUtils::make_spatial_list
Data_Geostat	data-frame of data (with columns 'Year', 'Lon', 'Lat' or 'E_km', 'N_km' at a minimum)
category_names	names for numeric categories in Data_Geostat
observations	default TRUE to include observations on the figure, FALSE to show only network
arrows	default TRUE to show directional connections between nodes, but FALSE may prevent crash if there are too many points.
root	default TRUE to show root nodes, FALSE in case there are other root nodes that are not meaningful.
savedir	Directory for plots
plot_type	1 == all or 2 == by year
show	print figure
cex_network	point size for network
...	addition inputs to plot
Data	output of VAST::Data_Fn which includes parent_s and child_s

Value

Figure plotting stream network and observations

merrillrudd/StreamUtils documentation built on May 29, 2019, 9:31 a.m.