Files in mi-erasmusmc/CovCoagEmaPrediction
Coagulopathy prediction in SARS-Cov-2
.Rbuildignore
.Rprofile
.gitignore
CovCoagEmaPrediction.Rproj
DESCRIPTION
HydraConfig.json
NAMESPACE
R/AgeCovariateCode.R
R/CohortCovariateCode.R
R/CovCoagEmaPrediction.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Helpers.R
R/Main.R
R/MeasurementCohortCovariateCode.R
R/MeasurementCovariateCode.R
R/PackageResults.R
R/SubmitResults.R
R/createDocument.R
R/createPlpProtocol.R
R/createValidationPackageJson.R
R/createValidationPackageOld.R
R/populateShinyApp.R
R/readJson.R
STUDY-PACKAGE-BUILD.md
STUDY-PACKAGE-EXECUTE.md
STUDY-PACKAGE-SETUP.md
STUDY-PACKAGE-SHARE.md
extras/CodeToRun.R
extras/CreatePredictionAnalysisDetails.R
extras/JsonCreation/CovCoagEmaJson.R
extras/PackageMaintenance.R
extras/PopulateCustomCovariates.R
extras/createLockfiles.R
extras/createPredSkelJson.R
extras/examplePredSkelJson.R
extras/packageDeps.R
extras/populateMultipleShiny.R
inst/cohorts/Antiinflammatory.json
inst/cohorts/Antineoplastic_immunomodulating.json
inst/cohorts/Antiphospholipid_syndrome.json
inst/cohorts/Antithrombotic_agent.json
inst/cohorts/Asthma.json
inst/cohorts/Atrial_fibrillation.json
inst/cohorts/Autoimmune_disease.json
inst/cohorts/Chronic_obstructive_lung_disease.json
inst/cohorts/Corticosteroids.json
inst/cohorts/Coxib.json
inst/cohorts/DTH.json
inst/cohorts/DVT_narrow.json
inst/cohorts/Dementia.json
inst/cohorts/Diabetes_mellitus.json
inst/cohorts/Heart_disease.json
inst/cohorts/Hormonal_contraceptives.json
inst/cohorts/Hypertensive_disorder.json
inst/cohorts/IS.json
inst/cohorts/Lipid_modifying_agent.json
inst/cohorts/MI.json
inst/cohorts/MI_or_IS.json
inst/cohorts/Malignant_neoplastic_disease.json
inst/cohorts/Obesity.json
inst/cohorts/PE.json
inst/cohorts/Renal_impairment.json
inst/cohorts/STR.json
inst/cohorts/Sex_hormones_modulators.json
inst/cohorts/Tamoxifen.json
inst/cohorts/Target.json
inst/cohorts/Thrombophilia.json
inst/cohorts/VTE_narrow.json
inst/doc/AddingCohortCovariates.pdf
inst/doc/CreatingStudyPackageInR.pdf
inst/doc/UsingSkeletonPackage.pdf
inst/settings/CohortsToCreate.csv
inst/settings/predictionAnalysisList.json
inst/sql/sql_server/Antiinflammatory.sql
inst/sql/sql_server/Antineoplastic_immunomodulating.sql
inst/sql/sql_server/Antiphospholipid_syndrome.sql
inst/sql/sql_server/Antithrombotic_agent.sql
inst/sql/sql_server/Asthma.sql
inst/sql/sql_server/Atrial_fibrillation.sql
inst/sql/sql_server/Autoimmune_disease.sql
inst/sql/sql_server/Chronic_obstructive_lung_disease.sql
inst/sql/sql_server/Corticosteroids.sql
inst/sql/sql_server/Coxib.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/DTH.sql
inst/sql/sql_server/DVT_narrow.sql
inst/sql/sql_server/Dementia.sql
inst/sql/sql_server/Diabetes_mellitus.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/Heart_disease.sql
inst/sql/sql_server/Hormonal_contraceptives.sql
inst/sql/sql_server/Hypertensive_disorder.sql
inst/sql/sql_server/IS.sql
inst/sql/sql_server/Lipid_modifying_agent.sql
inst/sql/sql_server/MI.sql
inst/sql/sql_server/MI_or_IS.sql
inst/sql/sql_server/Malignant_neoplastic_disease.sql
inst/sql/sql_server/Obesity.sql
inst/sql/sql_server/PE.sql
inst/sql/sql_server/Renal_impairment.sql
inst/sql/sql_server/STR.sql
inst/sql/sql_server/Sex_hormones_modulators.sql
inst/sql/sql_server/Tamoxifen.sql
inst/sql/sql_server/Target.sql
inst/sql/sql_server/Thrombophilia.sql
inst/sql/sql_server/VTE_narrow.sql
man/CovCoagEmaPrediction.Rd
man/createCohorts.Rd
man/createJournalDocument.Rd
man/createMultiPlpReport.Rd
man/createPlpProtocol.Rd
man/execute.Rd
man/getAgeCovariateData.Rd
man/getCohortCovariateData.Rd
man/getMeasurementCohortCovariateData.Rd
man/getMeasurementCovariateData.Rd
man/packageResults.Rd
man/populateShinyApp.Rd
man/submitResults.Rd
pyEnvironment.yml
readme.md
readmeSharing.md
renv.lock
vignettes/AddingCohortCovariates.Rmd
vignettes/CreatingStudyPackageInR.Rmd
vignettes/Figure1.png
vignettes/UsingSkeletonPackage.Rmd
