Man pages for microbiome/miaSim
Microbiome Data Simulation
| dot-applyInterType | Generate pairs of interactions according to interaction types |
| dot-estimateAFromSimulations | Get the interspecies interaction matrix A using leave-one-out... |
| dot-getInteractions | Generate interactions according to five types of interactions... |
| dot-isPosInt | Check whether a number is a positive integer |
| dot-replaceByZero | Replace one element with zero in a list |
| dot-simulationTimes | Generate simulation times and the indices of time points to... |
| powerlawA | Interaction matrix with Power-Law network adjacency matrix |
| randomA | Generate random interaction matrix for GLV model |
| randomE | Generate random efficiency matrix |
| rdirichlet | Generate dirichlet random deviates |
| simulateConsumerResource | Consumer-resource model simulation |
| simulateEventTimes | Generate a vector of event times |
| simulateGLV | Generalized Lotka-Volterra (gLV) simulation |
| simulateHubbell | Hubbell's neutral model simulation |
| simulateHubbellRates | Hubbell's neutral model simulation applied to time series |
| simulateRicker | Generate time series with the Ricker model |
| simulateSOI | Self-Organised Instability model (SOI) simulation |
| simulateStochasticLogistic | Stochastic Logistic simulation |
