mikelove/fishpond: Fishpond: downstream methods and tools for expression data
Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains a number of utilities for working with Salmon and Alevin quantification files.
Getting started
Browse package contents
Package details |
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| Bioconductor views | AlternativeSplicing BatchEffect DifferentialExpression DifferentialSplicing GeneExpression MultipleComparison Normalization RNASeq Regression Sequencing SingleCell Transcription Visualization |
| Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
| License | GPL-2 |
| Version | 2.7.5 |
| URL | https://thelovelab.github.io/fishpond https://thelovelab.com/mikelove/fishpond |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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