collapse_tech_reps: Collapse (sum) technical replicates in a set of R&D...

In mirvie/mirmisc: Non-Modeling Helper Functions For Mirvie R Coders

Description

Technical replicates, identified by the id_tech_rep column, are summed into a single sample. The resulting id_genes_counts is the longest common substring of the id_genes_counts of the input technical replicates.

Usage

collapse_tech_reps(prepped_rd_input)

Arguments

prepped_rd_input

A data frame. The output of a call to prep_rd_input().

Value

A dataframe with columns id_genes_counts, condition and the gene columns.

See Also

Other Arkady: check_sample_descs(), deseq_contrasts(), deseq_pairs(), deseq_wide(), fgsea_basic(), plot_cond_paired_pearson(), plot_down(), plot_metrics_global(), plot_var_mean_ratio(), prep_gsea_input_gene_set(), prep_gsea_input_lfc(), prep_rd_input(), reconcile_names()

mirvie/mirmisc documentation built on Dec. 21, 2021, 7 p.m.