prep_rd_input: Join the sample descriptions and genes counts data frames...

In mirvie/mirmisc: Non-Modeling Helper Functions For Mirvie R Coders

Description

This function calls reconcile_names() and check_sample_descs() internally.

Usage

prep_rd_input(sample_descs, genes_counts)

Arguments

sample_descs	A data frame of sample descriptions. The sampleName column holds the sample names.
genes_counts	A data frame of gene counts. The first column is gene and the rest are sample names.

Value

A data frame. The gene counts table with columns corresponding to the desired subset of data.

See Also

Other Arkady: check_sample_descs(), collapse_tech_reps(), deseq_contrasts(), deseq_pairs(), deseq_wide(), fgsea_basic(), plot_cond_paired_pearson(), plot_down(), plot_metrics_global(), plot_var_mean_ratio(), prep_gsea_input_gene_set(), prep_gsea_input_lfc(), reconcile_names()

mirvie/mirmisc documentation built on Dec. 21, 2021, 7 p.m.