reconcile_names: Match sample description sheet names to count file names.
In mirvie/mirmisc: Non-Modeling Helper Functions For Mirvie R Coders

Description Usage Arguments Details Value See Also

Given a data frame of sample descriptions from the lab team and a data frame from a genes_counts.txt file from a sequencing run, match the sample names and return a data frame of sample descriptions detailing the matching.

1	reconcile_names(sample_descs, genes_counts)

`sample_descs`	A data frame of sample descriptions. The `sampleName` column holds the sample names.
`genes_counts`	A data frame of gene counts. The first column is `gene` and the rest are sample names.

Name matching is done by first replacing all whitespace and underscores with hyphens and then asserting that the sampleName must a substring of the column name. The matching is done via a pair of columns id_sample_descs and id_genes_counts in the output.

A data frame.

Other Arkady: check_sample_descs(), collapse_tech_reps(), deseq_contrasts(), deseq_pairs(), deseq_wide(), fgsea_basic(), plot_cond_paired_pearson(), plot_down(), plot_metrics_global(), plot_var_mean_ratio(), prep_gsea_input_gene_set(), prep_gsea_input_lfc(), prep_rd_input()