deseq_pairs: Get the 'mirmodels::deseq()' tables from pairs of conditions.

In mirvie/mirmisc: Non-Modeling Helper Functions For Mirvie R Coders

Description

Technical replicates in genes_counts should be collapsed with collapse_tech_reps() prior to running this function.

Usage

deseq_pairs(prepped_rd_input)

Arguments

prepped_rd_input

A data frame. The output of a call to prep_rd_input().

Value

A dataframe. A series of mirmodels::deseq() tables bound together with dplyr::bind_rows(). There are two extra columns cond1 and cond2 to record the conditions being compared.

See Also

Other Arkady: check_sample_descs(), collapse_tech_reps(), deseq_contrasts(), deseq_wide(), fgsea_basic(), plot_cond_paired_pearson(), plot_down(), plot_metrics_global(), plot_var_mean_ratio(), prep_gsea_input_gene_set(), prep_gsea_input_lfc(), prep_rd_input(), reconcile_names()

mirvie/mirmisc documentation built on Dec. 21, 2021, 7 p.m.