Description Usage Arguments Value See Also Examples
Wide is samples in columns, genes in rows.
1 | deseq_wide(data, design, compvar)
|
data |
A wide datafame with raw counts that contains raw counts for samples of interest (may contain other samples as well, which will be filtered out). |
design |
A dataframe with all of the variables specified in |
compvar |
|
A DESeq2 object.
Other Arkady:
check_sample_descs()
,
collapse_tech_reps()
,
deseq_contrasts()
,
deseq_pairs()
,
fgsea_basic()
,
plot_cond_paired_pearson()
,
plot_down()
,
plot_metrics_global()
,
plot_var_mean_ratio()
,
prep_gsea_input_gene_set()
,
prep_gsea_input_lfc()
,
prep_rd_input()
,
reconcile_names()
1 2 3 4 5 6 7 | rs_genes <- arrow::read_feather(
system.file("extdata", "rs_genes_draw_3_4.feather", package = "mirmisc")
)
rs_meta <- arrow::read_feather(
system.file("extdata", "rs_meta_draw_3_4.feather", package = "mirmisc")
)
deseq_wide(rs_genes, rs_meta, compvar = "meta_draw")
|
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