Man pages for missuse/ragp
Mining for Hydroxyproline rich glycoprotein sequences
| at_nsp | 2700 Arabidopsis thaliana protein sequences. |
| CTDC | Composition descriptor (CTDC) |
| extractMBdesc | Normalized Moreau-Broto Autocorrelation Descriptor |
| getAAindex | Extract amino acid attributes |
| get_big_pi | Query big-PI Plant Predictor web server. |
| get_cdd | Query the Conserved Domain Database. |
| get_espritz | Query Espritz web server. |
| get_hmm | Query hmmer web server. |
| getKmer | Extract simetric k-mers around prolines |
| get_netGPI | Query NetGPI - 1.1 web server. |
| get_phobius | Query Phobius web server. |
| get_pred_gpi | Query PredGPI web server. |
| get_signalp | Query SignalP web server. |
| get_signalp5 | Query SignalP 5.0 web server. |
| get_targetp | Query TargetP web server. |
| get_tmhmm | Query TMHMM-2.0 web server. |
| maab | MAAB classification of hydroxyproline rich glycoproteins |
| pfam2go | Add GO terms based on pfam accessions |
| plot_prot | Protein structure diagram. |
| predict_hyp | Predict hydroxyproline positions in plant proteins based on... |
| QSOlevel | Quasi-Sequence-Order (QSO) Descriptor |
| scan_ag | Find AG glycomodules in protein sequences |
| scan_nglc | Detection of motifs for N-glycosylation on asparagine... |
| split_fasta | Split a fasta formatted file. |
| sub_hyp | Substitute prolines to hydroxyprolines |
