extractMBdesc: Normalized Moreau-Broto Autocorrelation Descriptor
In missuse/ragp: Mining for Hydroxyproline rich glycoprotein sequences

Description Usage Arguments Details Value Note Author(s) See Also

This function calculates the normalized Moreau-Broto autocorrelation descriptor.

1	extractMBdesc(x, mat, nlag)

`x`	A vector of k-mers
`mat`	A matrix with amino acid atributes. Columns are amino acids, rows are atributes
`nlag`	The lag parameter

Normalized Moreau-Broto Autocorrelation Descriptor is calculated based on the following amino acid attributes: CIDH920105 - Normalized average hydrophobicity scales, BHAR880101 - Average flexibility indices, CHAM820102 - Free energy of solution in water, kcal/mole, BIGC670101 - Residue volume, CHAM810101 - Polarizability parameter and DAYM780201 - Relative mutability

A matrix with the Normalized Moreau-Broto Autocorrelation Descriptor (dim: nlag * nrow(mat))

This is an internal function used inside predict_hyp

original R code by Nan Xiao, modified by Milan Dragićević

predict_hyp extractMoreauBroto

missuse/ragp documentation built on Jan. 4, 2022, 10:49 a.m.