at_nsp: 2700 Arabidopsis thaliana protein sequences.
In missuse/ragp: Mining for Hydroxyproline rich glycoprotein sequences
Description
Usage
Format
Source
Description
A dataset containing the sequences of 2706 Arabidopsis thaliana proteins, with a length of
100 to 400 amino acid residues predicted to contain a N-signal peptide by phobius web server or by SignalP 4.1
The dataset represents a cleaned version of all protein sequences obtained from Phytozome V12 as Athaliana_167_TAIR9.fa.gz.
Usage
1
Format
A data frame with 2706 rows and 4 variables:
- Transcript.id
TAIR Gene Model id
- sequence
amino acid sequence of the protein
- is.signalP
logical, predicted as N-sp by SignalP 4.1
- phobius
logical, predicted as N-sp by phobius web server
Source
http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Phytozome
missuse/ragp documentation built on Jan. 4, 2022, 10:49 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source
Description
A dataset containing the sequences of 2706 Arabidopsis thaliana proteins, with a length of 100 to 400 amino acid residues predicted to contain a N-signal peptide by phobius web server or by SignalP 4.1 The dataset represents a cleaned version of all protein sequences obtained from Phytozome V12 as Athaliana_167_TAIR9.fa.gz.
Usage
1 |
Format
A data frame with 2706 rows and 4 variables:
- Transcript.id
TAIR Gene Model id
- sequence
amino acid sequence of the protein
- is.signalP
logical, predicted as N-sp by SignalP 4.1
- phobius
logical, predicted as N-sp by phobius web server
Source
http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Phytozome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.