Man pages for mllg/batchtools
Tools for Computation on Batch Systems
| addAlgorithm | Define Algorithms for Experiments |
| addExperiments | Add Experiments to the Registry |
| addProblem | Define Problems for Experiments |
| assertRegistry | assertRegistry |
| batchExport | Export Objects to the Slaves |
| batchMap | Map Operation for Batch Systems |
| batchMapResults | Map Over Results to Create New Jobs |
| batchReduce | Reduce Operation for Batch Systems |
| batchtools-package | batchtools: Tools for Computation on Batch Systems |
| btlapply | Synchronous Apply Functions |
| cfBrewTemplate | Cluster Functions Helper to Write Job Description Files |
| cfHandleUnknownSubmitError | Cluster Functions Helper to Handle Unknown Errors |
| cfKillJob | Cluster Functions Helper to Kill Batch Jobs |
| cfReadBrewTemplate | Cluster Functions Helper to Parse a Brew Template |
| chunk | Chunk Jobs for Sequential Execution |
| clearRegistry | Remove All Jobs |
| doJobCollection | Execute Jobs of a JobCollection |
| estimateRuntimes | Estimate Remaining Runtimes |
| execJob | Execute a Single Jobs |
| findConfFile | Find a batchtools Configuration File |
| findJobs | Find and Filter Jobs |
| findTemplateFile | Find a batchtools Template File |
| getDefaultRegistry | Get and Set the Default Registry |
| getErrorMessages | Retrieve Error Messages |
| getJobTable | Query Job Information |
| getStatus | Summarize the Computational Status |
| grepLogs | Grep Log Files for a Pattern |
| JobCollection | JobCollection Constructor |
| JobExperiment | Jobs and Experiments |
| JobNames | Set and Retrieve Job Names |
| JoinTables | Inner, Left, Right, Outer, Semi and Anti Join for Data Tables |
| killJobs | Kill Jobs |
| loadRegistry | Load a Registry from the File System |
| loadResult | Load the Result of a Single Job |
| makeClusterFunctions | ClusterFunctions Constructor |
| makeClusterFunctionsDocker | ClusterFunctions for Docker |
| makeClusterFunctionsInteractive | ClusterFunctions for Sequential Execution in the Running R... |
| makeClusterFunctionsLSF | ClusterFunctions for LSF Systems |
| makeClusterFunctionsMulticore | ClusterFunctions for Parallel Multicore Execution |
| makeClusterFunctionsOpenLava | ClusterFunctions for OpenLava |
| makeClusterFunctionsSGE | ClusterFunctions for SGE Systems |
| makeClusterFunctionsSlurm | ClusterFunctions for Slurm Systems |
| makeClusterFunctionsSocket | ClusterFunctions for Parallel Socket Execution |
| makeClusterFunctionsSSH | ClusterFunctions for Remote SSH Execution |
| makeClusterFunctionsTORQUE | ClusterFunctions for OpenPBS/TORQUE Systems |
| makeExperimentRegistry | ExperimentRegistry Constructor |
| makeRegistry | Registry Constructor |
| makeSubmitJobResult | Create a SubmitJobResult |
| reduceResults | Reduce Results |
| reduceResultsList | Apply Functions on Results |
| removeExperiments | Remove Experiments |
| removeRegistry | Remove a Registry from the File System |
| resetJobs | Reset the Computational State of Jobs |
| runHook | Trigger Evaluation of Custom Function |
| runOSCommand | Run OS Commands on Local or Remote Machines |
| saveRegistry | Store the Registy to the File System |
| showLog | Inspect Log Files |
| submitJobs | Submit Jobs to the Batch Systems |
| summarizeExperiments | Quick Summary over Experiments |
| sweepRegistry | Check Consistency and Remove Obsolete Information |
| syncRegistry | Synchronize the Registry |
| Tags | Add or Remove Job Tags |
| testJob | Run Jobs Interactively |
| unwrap | Unwrap Nested Data Frames |
| waitForJobs | Wait for Termination of Jobs |
| Worker | Create a Linux-Worker |
