API for mmkhan19/singleCellTK
Interactive Analysis of Single Cell RNA-Seq Data

Global functions
.testFunctions	Source code
ComBatSCE	Man page Source code
DownsampleCells	Man page Source code
DownsampleDepth	Man page Source code
MAST	Man page Source code
MASTregression	Man page Source code
MASTviolin	Man page Source code
SCtkExperiment	Man page Source code
SCtkExperiment-class	Man page
alignSingleCellData	Man page Source code
batchqc_f.pvalue	Source code
calcEffectSizes	Man page Source code
campbellBrainSubset	Man page
convertGeneIDs	Man page Source code
createSCE	Man page Source code
distinctColors	Man page Source code
enrichRSCE	Man page Source code
filterSCData	Man page Source code
generateSimulatedData	Man page Source code
getBiomarker	Man page Source code
getClusterInputData	Man page Source code
getPCA	Man page Source code
getTSNE	Man page Source code
getUMAP	Man page Source code
gsvaPlot	Man page Source code
gsvaSCE	Man page Source code
iterateSimulations	Man page Source code
mouseBrainSubsetSCE	Man page
parseRsubreadLogs	Man page Source code
pcaVariances	Man page
pcaVariances,SCtkExperiment-method	Man page
pcaVariances<-	Man page
pcaVariances<-,SCtkExperiment-method	Man page
plotBatchVariance	Man page Source code
plotBiomarker	Man page Source code
plotDiffEx	Man page Source code
plotDimRed	Man page Source code
plotPCA	Man page Source code
plotTSNE	Man page Source code
plotUMAP	Man page Source code
powerCalc	Source code
saveBiomarkerRes	Man page Source code
saveDiffExResults	Man page Source code
scDiffEx	Man page Source code
scDiffExANOVA	Man page Source code
scDiffExDESeq2	Man page Source code
scDiffExlimma	Man page Source code
singleCellTK	Man page Source code
subDiffEx	Man page Source code
subDiffExANOVA	Man page Source code
subDiffExttest	Man page Source code
summarizeTable	Man page Source code
thresholdGenes	Man page Source code
visPlot	Man page Source code