singleCellTK: Run the single cell analysis app
In mmkhan19/singleCellTK: Interactive Analysis of Single Cell RNA-Seq Data

singleCellTK

R Documentation

Run the single cell analysis app

Description

Use this function to run the single cell analysis app.

Usage

singleCellTK(inSCE = NULL, includeVersion = TRUE, theme = "yeti")

Arguments

`inSCE`	The input SCtkExperiment class object
`includeVersion`	Include the version number in the SCTK header. The default is TRUE.
`theme`	The bootswatch theme to use for the singleCellTK UI. The default is 'flatly'.

Value

The shiny app will open

Examples

#Upload data through the app
if(interactive()){
  singleCellTK()
}

#Load the app with a SCtkExperiment object
if(interactive()){
  data("mouseBrainSubsetSCE")
  singleCellTK(mouseBrainSubsetSCE)
}

mmkhan19/singleCellTK documentation built on March 22, 2022, 7:43 a.m.