saveDiffExResults: saveDiffExResults Save Differential Expression Results with a...

In mmkhan19/singleCellTK: Interactive Analysis of Single Cell RNA-Seq Data

saveDiffExResults Save Differential Expression Results with a custom name.

Description

saveDiffExResults Save Differential Expression Results with a custom name.

Usage

saveDiffExResults(inSCE, diffex, name, method)

Arguments

inSCE	Input SCtkExperiment object. Required
diffex	results table saved from the differential expression analysis. Required
name	name of the result to be saved under in rowData(). Required
method	name of the diffex method used to generate the results. Options are DESeq2, limma and ANOVA. Required

Value

a new SCE object with the diffex result saved in the rowData using the "name"

Examples

data("mouseBrainSubsetSCE")
res <- scDiffEx(mouseBrainSubsetSCE,
                useAssay = "logcounts",
                condition = "level1class",
                ntop = length(rownames(mouseBrainSubsetSCE)),
                usesig = FALSE,
                diffexmethod = "limma")
sceObj <- saveDiffExResults(mouseBrainSubsetSCE, res, "Limma_Level1class", "limma")

mmkhan19/singleCellTK documentation built on March 22, 2022, 7:43 a.m.