getBiomarker: Given a list of genes and a SCtkExperiment object, return the...

In mmkhan19/singleCellTK: Interactive Analysis of Single Cell RNA-Seq Data

Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

Description

Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

Usage

getBiomarker(inSCE, gene, binary = "Binary", useAssay = "counts")

Arguments

inSCE	Input SCtkExperiment object. Required
gene	gene list
binary	"Binary" for binary expression or "Continuous" for a gradient. Default: "Binary"
useAssay	Indicate which assay to use. The default is "counts".

Value

getBiomarker(): A data.frame of expression values

Examples

getBiomarker(mouseBrainSubsetSCE, gene="C1qa")

mmkhan19/singleCellTK documentation built on March 22, 2022, 7:43 a.m.