merge_parental_maps: Build merged parental maps

In mmollina/MAPPoly: Genetic Linkage Maps in Autopolyploids

Build merged parental maps

Description

Build merged parental maps

Usage

merge_parental_maps(
  map.p1,
  map.p2,
  full.seq,
  full.mat,
  method = c("ols", "hmm"),
  verbose = TRUE
)

Arguments

map.p1	object of class mappoly.map with parent 1 phased
map.p2	object of class mappoly.map with parent 2 phased
full.seq	object of class mappoly.sequence containing parent 1 and parent 2 markers
full.mat	object of class mappoly.rf.matrix containing two-points recombination fraction estimations for parent 1 and parent 2 markers
method	indicates whether to use 'hmm' (Hidden Markov Models), 'ols' (Ordinary Least Squares) to re-estimate the recombination fractions

Value

object of class mappoly.map with both parents information

Author(s)

Marcelo Mollinari, [e-mail] with documentation and minor modifications by Cristiane Taniguti [e-mail]

mmollina/MAPPoly documentation built on March 8, 2024, 2:04 a.m.