API for molsysbio/STASNet
Fit and Simulate Model from Perturbation Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| MRAmodel | Man page Source code |
| MRAmodelSet | Man page Source code |
| addLayerLinks | Man page Source code |
| addLink | Man page Source code |
| addPLinfos | Man page Source code |
| addVariableParameters | Man page Source code |
| aggregateDirectPaths | Man page Source code |
| checkMIDAS | Source code |
| classic_initialisation | Source code |
| cloneModel | Man page Source code |
| compareParameters | Man page Source code |
| computeFitScore | Man page Source code |
| computeReducedChiScore | Source code |
| controlFC | Man page Source code |
| correlate_parameters | Source code |
| createDataSet | Man page Source code |
| createModel | Man page Source code |
| createModelSet | Man page Source code |
| createSimulation | Man page Source code |
| define_breaks | Source code |
| eplot | Source code |
| exportModel | Man page Source code |
| extractBasalActivity | Man page Source code |
| extractMIDAS | Man page Source code |
| extractModelCore | Man page Source code |
| extractStructure | Man page Source code |
| extractSubmodels | Man page Source code |
| extraction | Man page |
| fitFromModel | Man page Source code |
| fitmodel | Man page |
| fitmodel-package | Man page |
| generateToyDesign | Man page Source code |
| generateToyNetwork | Man page Source code |
| generate_infos | Man page Source code |
| getCombinationMatrix | Man page |
| getDirectPaths | Man page Source code |
| getExperimentalDesign | Source code |
| getMeasuredNodesNames | Source code |
| getModelError | Man page Source code |
| getModelStructure | Source code |
| getParametersForNewDesign | Source code |
| getParametersNames | Man page Source code |
| getSamples | Man page Source code |
| getSimulation | Man page Source code |
| get_range_product | Source code |
| get_running_time | Source code |
| importModel | Man page Source code |
| initModel | Man page Source code |
| is.string | Source code |
| midasFromData | Man page Source code |
| modelGroup | Man page Source code |
| mul_path | Man page Source code |
| niplotPL | Man page Source code |
| not_duplicated | Source code |
| parallelAnnealing | Source code |
| parallelPL | Source code |
| parallel_initialisation | Source code |
| parametersFromCorrelation | Source code |
| pastecoma | Source code |
| pastetab | Source code |
| pl_ci_product | Source code |
| plotHeatmap | Man page Source code |
| plotModelAccuracy | Man page Source code |
| plotModelGraph | Man page Source code |
| plotModelParameters | Man page Source code |
| plotModelScores | Man page Source code |
| plotModelScores.MRAmodel | Man page Source code |
| plotModelScores.modelGroup | Man page Source code |
| plotModelSimulation | Man page Source code |
| plotNetworkGraph | Man page Source code |
| plotParameters | Man page Source code Source code |
| plotParameters.modelGroup | Man page Source code |
| plotResiduals | Man page Source code |
| plotSimulation | Man page Source code |
| printDirectPaths | Man page Source code |
| printParameters | Man page Source code |
| print_error_intervals | Source code |
| product_ci | Source code |
| profileLikelihood | Man page Source code |
| readMIDAS | Man page Source code |
| readNetworkAdj | Man page Source code |
| rebuildModel | Man page Source code |
| rebuildModelSet | Man page Source code |
| reduceModel | Man page Source code |
| refitModel | Source code |
| refitWithFixedParameter | Man page Source code |
| refitWithVariableParameter | Man page Source code |
| selectMinimalModel | Man page Source code |
| setDebug | Source code |
| setVariableParameters | Man page Source code |
| simulateModel | Man page Source code |
| simulated_annealing_wrapper | Source code |
| sub_data_frame | Man page Source code |
| subsetDirectPathsAggregation | Man page Source code |
| suggestExtension | Man page Source code |
| testModel | Man page Source code |
| trim_num | Source code |
