getDGETable: Extract table of differential results from 'K2' object

In montilab/K2Taxonomer: Creating annotated submodules of high-throughput data through recursive partitioning

Extract table of differential results from 'K2' object

Description

Create table differential analysis results from 'K2' object.

Usage

getDGETable(K2res)

Arguments

K2res

A K2 class object.

Value

A data.frame object with the following columns:

• gene: The identifier of the gene

• coef: The difference between the means of each subgroup at a given partition

• mean: The mean across all observations at the given partition

• t: The test statistic estimated by differential analysis

• pval: The p-value estimated by differential analysis

• fdr: The multiple hypothesis corrected fdr p-value, adjusted across all partitions

• edge: Indication of which subgroup the gene was assigned at a given partition

• node: The identifier of the partition

• direction: The direction of coefficient for the assigned gene

References

\insertRef

reed_2020K2Taxonomer \insertReflimmaK2Taxonomer \insertRefbhK2Taxonomer

montilab/K2Taxonomer documentation built on April 5, 2025, 3:58 a.m.