Files in montilab/K2Taxonomer
Creating annotated submodules of high-throughput data through recursive partitioning
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/K2dashboard.R
R/K2dendro.R
R/K2preproc.R
R/K2tax.R
R/K2visNetwork.R
R/aggregateGSVAscores.R
R/cKmeansWrapper.R
R/cKmeansWrapperSubsample.R
R/checkK2.R
R/data.R
R/dgeWrapper.R
R/doSplit.R
R/fixFDR.R
R/formatCov.R
R/getDGETable.R
R/getEnrichmentTable.R
R/getGenePathways.R
R/getTestsModTable.R
R/hclustWrapper.R
R/isK2.R
R/runDGEmods.R
R/runDSSEmods.R
R/runFisher1sided.R
R/runFisher2sided.R
R/runGSEmods.R
R/runGSVAmods.R
R/runK2Taxonomer.R
R/runTestsMods.R
R/runTtest.R
R/runWilcox.R
R/signatureWrapper.R
README.md
data/K2res.rda
inst/NEWS.Rd
inst/REFERENCES.bib
inst/dashboard/DashHelper.R
inst/dashboard/K2Dashboard.Rmd
inst/dashboard/about.md
inst/unitTests/test_functions.R
man/K2-class.Rd
man/K2dashboard.Rd
man/K2data.Rd
man/K2dendro.Rd
man/K2eSet.Rd
man/K2gSet.Rd
man/K2gene2Pathway.Rd
man/K2geneURL.Rd
man/K2genesetURL.Rd
man/K2genesets.Rd
man/K2info.Rd
man/K2meta.Rd
man/K2preproc.Rd
man/K2res.Rd
man/K2results.Rd
man/K2tax.Rd
man/K2visNetwork.Rd
man/aggregateGSVAscores.Rd
man/cKmeansWrapper.Rd
man/cKmeansWrapperSubsample.Rd
man/getDGETable.Rd
man/getEnrichmentTable.Rd
man/getGenePathways.Rd
man/getTestsModTable.Rd
man/hclustWrapper.Rd
man/runDGEmods.Rd
man/runDSSEmods.Rd
man/runGSEmods.Rd
man/runGSVAmods.Rd
man/runK2Taxonomer.Rd
man/runTestsMods.Rd
tests/runTests.R
vignettes/.gitignore
vignettes/K2Taxonomer_dashboard.Rmd
vignettes/K2Taxonomer_dashhelp.Rmd
vignettes/K2Taxonomer_singlecell.Rmd
vignettes/RunningK2Taxonomer.Rmd
