getGenePathways: Map features (genes) to feature list (genesets)

In montilab/K2Taxonomer: Creating annotated submodules of high-throughput data through recursive partitioning

Map features (genes) to feature list (genesets)

Description

This function will create a named vector of collapsed names of named genesets list, separated by '; '

Usage

getGenePathways(genesets)

Arguments

genesets

A named list of features in row names of dataMatrix.

Value

A named vector

Examples

## Read in ExpressionSet object
library(Biobase)
data(sample.ExpressionSet)

## Create dummy set of gene sets
genes <- rownames(sample.ExpressionSet)
genesetsMadeUp <- list(
    GS1=genes[1:50],
    GS2=genes[51:100],
    GS3=genes[101:150])

head(getGenePathways(genesetsMadeUp))

montilab/K2Taxonomer documentation built on Jan. 25, 2024, 4:29 p.m.