Files in morris-lab/Capybara
A tool to measure cell identity and fate transitions
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
Capybara.Rproj
DESCRIPTION
NAMESPACE
R/.DS_Store
R/Binarization.R
R/Classification.R
R/EmpiricalPValueCalculation.R
R/Helper.R
R/HighResolutionReferenceConstruction.R
R/MultiIDFilterQP.R
R/SingleCellQuadraticProgramming.R
R/SingleCellQuadraticProgrammingAux.R
R/TransitionScoreCalculation.R
README.md
examples/.DS_Store
examples/Monocle_hat_colin.png
examples/Step 1 - ARCHS4 Mining.R
examples/Step 2 - bulk cleaning.R
examples/bulk class mca pancreatic.png
examples/bulk_composition_pancreatic.pdf
examples/cardiac_TS_plots.png
examples/cardiac_bulk_v2.png
examples/features.tsv
examples/gene_info.tsv
examples/pancreatic dot plot.pdf
examples/pancreatic dot plot.png
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/Bulk Reference RPKM.Rds
inst/extdata/Bulk Reference Raw.Rds
inst/extdata/MCA Adult Background.Rds
inst/extdata/MCA Embryonic Background.Rds
inst/extdata/MCA_CellAssignments.csv
inst/extdata/baron_dataset.zip
inst/extdata/features.tsv
man/binarization.mann.whitney.Rd
man/binary.to.classification.Rd
man/calc.scale.ratio.Rd
man/construct.high.res.reference.Rd
man/gene.intersect.sub.Rd
man/get.least.connected.Rd
man/get.mid.connected.Rd
man/get.most.connected.Rd
man/multi.id.curate.qp.Rd
man/normalize.dt.Rd
man/perc.calc.aux.Rd
man/percentage.calc.Rd
man/ref.construction.Rd
man/sample.func.Rd
man/sc.quad.prog.run.Rd
man/single.round.QP.analysis.Rd
man/top.genes.Rd
man/transition.score.Rd
